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1

Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes

Law, MeiYee, Childs, Kevin L., Campbell, Michael S., Stein, Joshua C., Olson, Andrew J., Holt, Carson, Panchy, Nicholas, Lei, Jikai, Jiao, Dian, Andorf, Carson M., Lawrence, Carolyn J., Ware, Doreen,

Journal:

PLANT PHYSIOLOGY

Year:

2015

Language:

english

File:

PDF, 1.47 MB

english, 2015

2

Gene expression profiling of multiple histone deacetylase (HDAC) inhibitors: defining a common gene set produced by HDAC inhibition in T24 and MDA carcinoma cell lines.

Glaser, Keith B, Staver, Michael J, Waring, Jeffrey F, Stender, Joshua, Ulrich, Roger G, Davidsen, Steven K

Journal:

Molecular Cancer Therapeutics

Year:

2003

Language:

english

File:

PDF, 595 KB

english, 2003

3

Improved RNA-seq Workflows Using CyVerse Cyberinfrastructure

Chougule, Kapeel M., Wang, Liya, Stein, Joshua C., Wang, Xiaofei, Devisetty, Upendra Kumar, Klein, Robert R., Ware, Doreen

Journal:

Current Protocols in Bioinformatics

Year:

2018

Language:

english

File:

PDF, 6.44 MB

english, 2018

4

Changing perspectives on terrestrial nitrogen cycling: the importance of weathering and evolved resource‐use traits for understanding ecosystem responses to global change

Wooliver, Rachel, Pellegrini, Adam F.A., Waring, Bonnie, Houlton, Benjamin Z., Averill, Colin, Schimel, Joshua, Hedin, Lars O., Bailey, Joseph K., Schweitzer, Jennifer A.

Journal:

Functional Ecology

Year:

2019

Language:

english

File:

PDF, 1021 KB

english, 2019

5

Familial antiphospholipid antibody syndrome: Criteria for disease and evidence for autosomal dominant inheritance

Niti Goel, Thomas L. Ortel, Deeksha Bali, Joshua P. Anderson, Ian S. Gourley, Howard Smith, Colleen A. Morris, Muriel DeSimone, D. Ware Branch, Peter Ford, Donald Berdeaux, Robert A. S. Roubey, Donna

Journal:

Arthritis & Rheumatism

Year:

1999

Language:

english

File:

PDF, 174 KB

english, 1999

6

Vascular endothelial growth factor gene transfer for diabetic polyneuropathy: A randomized, double-blinded trial

Allan H. Ropper, Kenneth C. Gorson, Clifton L. Gooch, David H. Weinberg, Ann Pieczek, James H. Ware, Joshua Kershen, Adam Rogers, Drasko Simovic, Peter Schratzberger, Rudolf Kirchmair, Douglas Losordo

Journal:

Annals of Neurology

Year:

2009

Language:

english

File:

PDF, 156 KB

english, 2009

7

Electrostatic dust transport on Eros: 3-D simulations of pond formation

Anna L.H. Hughes, Joshua E. Colwell, Alexandria Ware DeWolfe

Journal:

Year:

2008

Language:

english

File:

PDF, 1.61 MB

english, 2008

8

Evaluating Adaptive Processes for Conservation and Management of Estuarine and Coastal Resources

Christina L. Richards, John P. Wares, Joshua A. Mackie

Journal:

Estuaries and Coasts

Year:

2010

Language:

english

File:

PDF, 138 KB

english, 2010

9

A comparison of washed and volume-reduced platelets with respect to platelet activation, aggregation, and plasma protein removal

Muthu Veeraputhiran, Jerry Ware, Judith Dent, Joshua Bornhorst, Ginell Post, Michele Cottler-Fox, Gina Pesek, John Theus, Mayumi Nakagawa

Journal:

Transfusion (Wiley)

Year:

2011

Language:

english

File:

PDF, 568 KB

english, 2011

10

Postoperative Estradiol Levels Associate With Development of Primary Graft Dysfunction in Lung Transplantation Patients

Julie A. Bastarache, Joshua M. Diamond, Steven M. Kawut, David J. Lederer, Lorraine B. Ware, Jason D. Christie

Journal:

Gender Medicine

Year:

2012

Language:

english

File:

PDF, 463 KB

english, 2012

11

Aging memory for pictures: Using high-density event-related potentials to understand the effect of aging on the picture superiority effect

Brandon A. Ally, Jill D. Waring, Ellen H. Beth, Joshua D. McKeever, William P. Milberg, Andrew E. Budson

Journal:

Neuropsychologia

Year:

2008

Language:

english

File:

PDF, 1.33 MB

english, 2008

12

Preserved frontal memorial processing for pictures in patients with mild cognitive impairment

Brandon A. Ally, Joshua D. McKeever, Jill D. Waring, Andrew E. Budson

Journal:

Neuropsychologia

Year:

2009

Language:

english

File:

PDF, 1.29 MB

english, 2009

13

Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats

Thomas Wicker, Apurva Narechania, Francois Sabot, Joshua Stein, Giang TH Vu, Andreas Graner, Doreen Ware, Nils Stein

Journal:

Year:

2008

Language:

english

File:

PDF, 2.19 MB

english, 2008

14

A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes

Stefan Kurtz, Apurva Narechania, Joshua C Stein, Doreen Ware

Journal:

Year:

2008

Language:

english

File:

PDF, 1.39 MB

english, 2008

15

A comparison of ARA and DNA data for microbial source tracking based on source-classification models developed using classification trees

Bertram Price, Elichia Venso, Mark Frana, Joshua Greenberg, Adam Ware

Journal:

Year:

2007

Language:

english

File:

PDF, 287 KB

english, 2007

16

Alternative estimate of source distribution in microbial source tracking using posterior probabilities

Joshua Greenberg, Bertram Price, Adam Ware

Journal:

Year:

2010

Language:

english

File:

PDF, 212 KB

english, 2010

17

Plasma monocyte chemotactic protein-1 levels at 24 hours are a biomarker of primary graft dysfunction after lung transplantation

Rupal J. Shah, Joshua M. Diamond, David J. Lederer, Selim M. Arcasoy, Edward M. Cantu, E.J. Demissie, Steven M. Kawut, Benjamin Kohl, James C. Lee, Joshua Sonett, Jason D. Christie, Lorraine B. Ware

Journal:

Translational Research

Year:

2012

Language:

english

File:

PDF, 257 KB

english, 2012

18

Platelet Dysfunction and a High Bone Mass Phenotype in a Murine Model of Platelet-Type von Willebrand Disease

Larry J. Suva, Eric Hartman, Joshua D. Dilley, Susan Russell, Nisreen S. Akel, Robert A. Skinner, William R. Hogue, Ulrich Budde, Kottayil I. Varughese, Taisuke Kanaji, Jerry Ware

Journal:

The American Journal of Pathology

Year:

2008

Language:

english

File:

PDF, 461 KB

english, 2008

19

DYSTROPHIN GENOTYPE-CARDIAC PHENOTYPE CORRELATIONS IN DUCHENNE AND BECKER MUSCULAR DYSTROPHY USING CARDIAC MAGNETIC RESONANCE IMAGING

Tandon, Animesh, Jefferies, John, Hor, Kan, Wong, Brenda, Ware, Stephanie, Mazur, Wojciech, Fleck, Robert, Gao, Zhiqian, Sticka, Joshua, Benson, D. Woodrow, Taylor, Michael

Journal:

Journal of the American College of Cardiology

Year:

2014

Language:

english

File:

PDF, 178 KB

english, 2014

20

A LONGITUDINAL EXAMINATION OF CARDIAC DYSFUNCTION IN PATIENTS WITH DUCHENNE AND BECKER MUSCULAR DYSTROPHY VIA CMRI

Tandon, Animesh, Taylor, Michael, Ware, Stephanie, Jefferies, John, Sticka, Joshua, Fleck, Robert J., Wong, Brenda L., Mazur, Wojciech, Hor, Kan

Journal:

Journal of the American College of Cardiology

Year:

2013

Language:

english

File:

PDF, 148 KB

english, 2013

21

Plasma Complement Levels Are Associated with Primary Graft Dysfunction and Mortality after Lung Transplantation

Shah, Rupal J., Emtiazjoo, Amir M., Diamond, Joshua M., Smith, Patricia A., Roe, David W., Wille, Keith M., Orens, Jonathan B., Ware, Lorraine B., Weinacker, Ann, Lama, Vibha N., Bhorade, Sangeeta M.,

Journal:

American Journal of Respiratory and Critical Care Medicine

Year:

2014

Language:

english

File:

PDF, 536 KB

english, 2014

22

Efficacy of In-Home Parent-Child Interaction Therapy

Ware, Lisa M., McNeil, Cheryl B., Masse, Joshua, Stevens, Sarah

Journal:

Child & Family Behavior Therapy

Year:

2008

Language:

english

File:

PDF, 421 KB

english, 2008

23

Calibrating photon-counting detectors to high accuracy: background and deadtime issues

Ware, Michael, Migdall, Alan, Bienfang, Joshua C., Polyakov, Sergey V.

Journal:

Journal of Modern Optics

Year:

2007

Language:

english

File:

PDF, 610 KB

english, 2007

24

Dystrophin Genotype–Cardiac Phenotype Correlations in Duchenne and Becker Muscular Dystrophies Using Cardiac Magnetic Resonance Imaging

Tandon, Animesh, Jefferies, John L., Villa, Chet R., Hor, Kan N., Wong, Brenda L., Ware, Stephanie M., Gao, Zhiqian, Towbin, Jeffrey A., Mazur, Wojciech, Fleck, Robert J., Sticka, Joshua J., Benson, D

Journal:

The American Journal of Cardiology

Year:

2015

Language:

english

File:

PDF, 1.60 MB

english, 2015

25

Whole genomede novoassemblies of three divergent strains of rice,Oryza sativa, document novel gene space ofausandindica

Schatz, Michael C, Maron, Lyza G, Stein, Joshua C, Wences, Alejandro, Gurtowski, James, Biggers, Eric, Lee, Hayan, Kramer, Melissa, Antoniou, Eric, Ghiban, Elena, Wright, Mark H, Chia, Jer-ming, Ware,

Journal:

Year:

2014

Language:

english

File:

PDF, 1.65 MB

english, 2014

26

Managing student anxiety during curriculum change

Ryan, Anna T., Goss, Barbara D., Waring, Joshua M., O’Brien, Richard C.

Journal:

Medical Teacher

Year:

2014

Language:

english

File:

PDF, 38 KB

english, 2014

27

Coupling a branch enclosure with differential mobility spectrometry to isolate and measure plant volatiles in contained greenhouse settings

McCartney, Mitchell M., Spitulski, Sierra L., Pasamontes, Alberto, Peirano, Daniel J., Schirle, Michael J., Cumeras, Raquel, Simmons, Jason D., Ware, Jeffrey L., Brown, Joshua F., Poh, Alexandria J.Y.

Journal:

Year:

2016

Language:

english

File:

PDF, 6.01 MB

english, 2016

28

RARE-05BIFRONTAL OSTEOMA IN CONJUNCTION WITH CALVARIUM HEMANGIOMA: FIRST REPORTED CASE

Mathkour, Mansour, Garces, Juanita, Hanna, Joshua, Ware, Marcus

Journal:

Year:

2015

Language:

english

File:

PDF, 24 KB

english, 2015

29

Molecular mobility of hydroxyethyl cellulose (HEC) films characterised by thermally stimulated currents (TSC) spectroscopy

Owusu-Ware, Samuel K., Boateng, Joshua, Jordan, Daniel, Portefaix, Sara, Tasseto, Renata, Ramano, Camila D., Antonijević, Milan D.

Journal:

International Journal of Pharmaceutics

Year:

2016

Language:

english

File:

PDF, 1.18 MB

english, 2016

30

RARE-11INTRACRANIAL ATYPICAL RHABDOID MENINGIOMA LACKING MALIGNANT FEATURES: CASE REPORT AND LITERATURE REVIEW

Mathkour, Mansour, Garces, Juanita, Hanna, Joshua, Ware, Marcus

Journal:

Year:

2015

Language:

english

File:

PDF, 24 KB

english, 2015

31

Latent Class Analysis Identifies Distinct Phenotypes of Primary Graft Dysfunction After Lung Transplantation

Shah, Rupal J., Diamond, Joshua M., Cantu, Edward, Lee, James C., Lederer, David J., Lama, Vibha N., Orens, Jonathan, Weinacker, Ann, Wilkes, David S., Bhorade, Sangeeta, Wille, Keith M., Ware, Lorrai

Journal:

Year:

2013

Language:

english

File:

PDF, 692 KB

english, 2013

32

RARE-06ORBITAL OSTEOMA IN CONJUNCTION WITH A CHOLESTEROL GRANULOMA: FIRST REPORTED CASE

Garces, Juanita, Mathkour, Mansour, Hanna, Joshua, Ware, Marcus

Journal:

Year:

2015

Language:

english

File:

PDF, 23 KB

english, 2015

33

Plasma Biomarkers of Oxidant Stress and Development of Organ Failure in Severe Sepsis

Ware, Lorraine B., Fessel, Joshua P., May, Addison K., Roberts, L. Jackson

Journal:

Year:

2011

Language:

english

File:

PDF, 415 KB

english, 2011

34

Loss of RNA expression and allele-specific expression associated with congenital heart disease

McKean, David M., Homsy, Jason, Wakimoto, Hiroko, Patel, Neil, Gorham, Joshua, DePalma, Steven R., Ware, James S., Zaidi, Samir, Ma, Wenji, Patel, Nihir, Lifton, Richard P., Chung, Wendy K., Kim, Rich

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 375 KB

english, 2016

35

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing

Wang, Bo, Tseng, Elizabeth, Regulski, Michael, Clark, Tyson A, Hon, Ting, Jiao, Yinping, Lu, Zhenyuan, Olson, Andrew, Stein, Joshua C., Ware, Doreen

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 2.85 MB

english, 2016

36

Beyond Selection

Goss, Barbara D., Ryan, Anna T., Waring, Joshua, Judd, Terry, Chiavaroli, Neville G., O’Brien, Richard Charles, Trumble, Stephen C., McColl, Geoffrey J.

Journal:

Academic Medicine

Year:

2017

Language:

english

File:

PDF, 172 KB

english, 2017

37

A common deletion in the haptoglobin gene associated with blood cholesterol levels among Chinese women

Zheng, Neil S, Bastarache, Lisa A, Bastarache, Julie A, Lu, Yingchang, Ware, Lorraine B, Shu, Xiao-Ou, Denny, Joshua C, Long, Jirong

Journal:

Journal of Human Genetics

Year:

2017

Language:

english

File:

PDF, 128 KB

english, 2017

38

RARE-51. PLEOMORPHIC XANTHOASTROCYTOMA OF THE CEREBELLUM IN A PATIENT WITH NEUROFIBROMATOSIS TYPE I: A CASE REPORT AND LITERATURE REVIEW

Garces, Juanita, Mathkour, Mansour, Scullen, Tyler, Boehm, Lauren, Hanna, Joshua, Sulaiman, Olawale A.R., Ware, Marcus

Journal:

Year:

2016

Language:

english

File:

PDF, 42 KB

english, 2016

39

Ascorbic acid attenuates endothelial permeability triggered by cell-free hemoglobin

Kuck, Jamie L., Bastarache, Julie A., Shaver, Ciara M., Fessel, Joshua P., Dikalov, Sergey I., May, James M., Ware, Lorraine B.

Journal:

Biochemical and Biophysical Research Communications

Year:

2017

Language:

english

File:

PDF, 580 KB

english, 2017

40

A Genome-Wide Characterization of MicroRNA Genes in Maize

Zhang, Lifang, Chia, Jer-Ming, Kumari, Sunita, Stein, Joshua C., Liu, Zhijie, Narechania, Apurva, Maher, Christopher A., Guill, Katherine, McMullen, Michael D., Ware, Doreen, Ecker, Joseph R.

Journal:

Year:

2009

Language:

english

File:

PDF, 791 KB

english, 2009

41

[American Thoracic Society American Thoracic Society 2011 International Conference, May 13-18, 2011 • Denver Colorado - ()] C14. ADVANCES IN LUNG TRANSPLANT RESEARCH - Genetic Variation In Prostaglandin E2 Family Members Is Associated With The Development Of Primary Graft Dysfunction After Lung Transplantation

Diamond, Joshua M., Feng, Rui, Meyer, Nuala J., Kawut, Steven M., Lee, James C., Ahya, Vivek, Cantu, Edward, Ware, Lorraine, Palmer, Scott M., Bhorade, Sangeeta, Lama, Vibha, Weinacker, Ann, Orens, Jo

Year:

2011

Language:

english

File:

PDF, 24 KB

english, 2011

42

Multidrug-resistant tuberculosis in Western Australia, 1998–2012

Francis, Joshua R, Blyth, Christopher C, Colby, Sarah, Fagan, Joanna M, Waring, Justin

Journal:

The Medical Journal of Australia

Year:

2014

Language:

english

File:

PDF, 236 KB

english, 2014

43

Post‐reperfusion plasma endothelial activation markers are associated with acute kidney injury after lung transplantation

Forker, Caitlin M., Miano, Todd A., Reilly, John P., Oyster, Michelle L., Porteous, Mary K., Cantu, Edward E., Ware, Lorraine B., Diamond, Joshua M., Christie, Jason D., Shashaty, Michael G. S.

Journal:

American Journal of Transplantation

Year:

2019

Language:

english

File:

PDF, 351 KB

english, 2019

44

Post‐reperfusion plasma endothelial activation markers are associated with acute kidney injury after lung transplantation

Forker, Caitlin M., Miano, Todd A., Reilly, John P., Oyster, Michelle L., Porteous, Mary K., Cantu, Edward E., Ware, Lorraine B., Diamond, Joshua M., Christie, Jason D., Shashaty, Michael G. S.

Journal:

American Journal of Transplantation

Year:

2019

File:

PDF, 351 KB

2019

45

Genetic testing and cascade screening in pediatric long QT syndrome and hypertrophic cardiomyopathy

Knight, Linda M., Miller, Erin, Kovach, Joshua, Arscott, Patricia, von Alvensleben, Johannes C., Bradley, David, Valdes, Santiago O., Ware, Stephanie M., Meyers, Lindsey, Travers, Curtis D., Campbell,

Journal:

Year:

2019

Language:

english

File:

PDF, 597 KB

english, 2019

46

The Second Movement Meant a Book of Bodies and Warped Vinyl Spinning, and: The Third Movement Meant: “Be Lake/ or Fog/ We Saw, Our Heads”, and: The Fourth Movement Meant the Materials Became Available, and: The Fifth Movement Meant There Was Nothing Left to Build So We Built Ourselves

Moody, Trey, Ware, Joshua

Journal:

Colorado Review

Year:

2010

File:

PDF, 253 KB

2010

47

Think of People as Buildings

Journal:

Cream City Review

Year:

2012

File:

PDF, 265 KB

2012

48

Bridging the gap between physical and mental illness in community pharmacy ( PharMIbridge ): protocol for an Australian cluster randomised controlled trial

Wheeler, Amanda J, O'Reilly, Claire L, El-Den, Sarira, Byrnes, Joshua, Ware, Robert S, McMillan, Sara S

Journal:

Year:

2020

File:

PDF, 1.06 MB

2020

49

Velcro Ties in Early Postoperative Pediatric Tracheostomy Care: A Systematic Review and Meta-analysis

Chang, Brent A., Gurberg, Joshua, Ware, Erin, Luu, Kimberly

Journal:

Year:

2020

File:

PDF, 850 KB

2020

50

Electrocatalytic CO 2 Reduction over Cu 3 P Nanoparticles Generated via a Molecular Precursor Route

Downes, Courtney A., Libretto, Nicole J., Harman-Ware, Anne E., Happs, Renee M., Ruddy, Daniel A., Baddour, Frederick G., Ferrell III, Jack R., Habas, Susan E., Schaidle, Joshua A.

Journal:

ACS Applied Energy Materials

Year:

2020

File:

PDF, 3.15 MB

2020